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Run your whole lab from your AI assistant.

Connect Claude, ChatGPT or Copilot and ask in plain language. Your AI co-scientist can take 150 actions across all 13 workspaces, from counting nuclei to writing up the experiment.

Your AI assistantT cell activation

An AI assistant working in Conspecta. You ask: Count the nuclei on Tuesday's plate, put the counts beside the CD8+ percentages from the flow run, and write it up with a figure.

It takes 5 Conspecta actions:

  1. Run an image analysis over a set, in Image analysis: Plate 2: nuclei count
  2. Count populations, in Flow cytometry: Tuesday's CD8 tubes
  3. Create a data table, in Data tables: Nuclei vs CD8+
  4. Compose a figure, in Figures: Figure 2: Nuclei vs CD8+
  5. Write a notebook page, in Notes: Tuesday: CD8 activation, day 3

Done. Both readouts rise with stimulation, and IL-2 gives the highest of each. I wrote it up as drafts for you to check and sign off:

  • Tuesday: CD8 activation, day 3, in Notes
  • Figure 2: Nuclei vs CD8+, in Figures

Everything it makes opens in the workspace, ready to edit.

Your assistant saves its work as the same pages, figures, flow runs and sequences you build by hand. Restyle a panel, rename a feature on the map, rewrite a paragraph, and the table on the page stays live.

See the Notes workspace
See the Flow cytometry workspace
See the Genetics workspace
See the Figures workspace

The same method on every run.

Your assistant runs image analysis and gating as a standard series of steps, from your lab's saved templates, and records every step and setting on the run. Rerun it next month, or hand the template to a colleague, and the same images give the same numbers.

  • Each run records its steps and settings

    Read any run back with its exact steps and the setting used on each image.

  • Templates keep every version

    A lab agrees on one way of measuring, and every result shows the version it was built on.

  • Gating travels as a template

    A saved gating strategy fits each file's own channels, so this month's tubes line up with last month's.

See the Image analysis workspaceSee the Flow cytometry workspace
Early access

Tag your lab's agent on any record, and get the answer in the thread.

Ask the way you would ask a labmate: @mention your lab's agent by name in a comment on a figure, table or page. It starts from the record you're on, does the work in its workspace, and replies under your comment, with every change recorded as asked by you.

Work from your own assistant is recorded under your name, marked via assistant, so the history always says who asked.

Ask about early access

Ask about any part of the lab.

The same connection reaches your stock, orders, freezers, instruments, sequences, protocols and plans.

Connect your assistant in three steps.

Add one address, sign in, and choose what it can reach. Revoke it in Settings whenever you like, and it stops at once.

  1. Add the address

    Paste it into your assistant's connectors or MCP settings.

    https://mcp.conspecta.bio/mcp

  2. Sign in to Conspecta

    Your assistant opens Conspecta in your browser. Sign in with the account you already use.

  3. Choose what it can reach

    Access

    It can answer questions and add and change your team's data.

    Projects

    Includes projects you join later.

    Click Allow and your assistant is connected.

Works with Claude, ChatGPT, Copilot, Cursor, Gemini CLI and any assistant that connects to a remote MCP server. See the setup steps for each one.

Connecting your own scripts or a pipeline? Use the Conspecta API.

150 actions across 13 workspaces.

Three from each workspace below. Open a card for the rest, or read every action, with the access it needs, in the guide.

Image analysis, 24 actions
  • Run an image analysis over a setWrite
  • Look at what a run detected
  • Try a range of values for a settingWrite
21 more
  • List microscopy image sets
  • Read an image set
  • List images
  • Read an image's details
  • List image analysis
  • Read an image analysis
  • List ready-made methods
  • List image analysis settings
  • Set up an image analysisWrite
  • Run an image analysisWrite
  • Check a run
  • Save a run's resultsWrite
  • Follow a run over a set
  • Ask for a reviewWrite
  • List image analysis templates
  • Read an image analysis template
  • Find the image analysis built from a template
  • Export a pipeline file
  • Save a templateWrite
  • Publish a template's next versionWrite
  • Import a pipeline fileWrite
Flow cytometry, 20 actions
  • Apply a gating templateWrite
  • Count populationsWrite
  • Cluster filesWrite
17 more
  • List flow cytometry analysis
  • Read a flow cytometry analysis
  • List FCS files
  • Read an FCS file's details
  • List gating templates
  • Read a gating template
  • Find the flow analysis built from a template
  • Start a flow cytometry analysisWrite
  • Save population countsWrite
  • Read a clustering run
  • Save a clustering runWrite
  • List fluorochromes
  • List markers
  • List measured dyes
  • Score a panelWrite
  • Set a panel's cytometerWrite
  • Record a cytometer's opticsWrite
Genetics, 11 actions
  • Run a BLAST searchWrite
  • Add a published sequenceWrite
  • Mark a regionWrite
8 more
  • List sequences
  • Read a sequence's details
  • Read a sequence's bases
  • Find a stretch of bases
  • Register a sequenceWrite
  • Edit a sequence recordWrite
  • Search NCBI and UniProt
  • Read a BLAST search
Samples, 10 actions
  • Register a sampleWrite
  • Create a sample groupWrite
  • Read a plate template
7 more
  • List samples
  • Read a sample
  • Search samples
  • Edit a sampleWrite
  • Add samples to a groupWrite
  • List plate templates
  • Find the plates built from a template
Notes, 7 actions
  • Write a notebook pageWrite
  • Rewrite a passageWrite
  • Search notebook pages
4 more
  • List notebook pages
  • Read a notebook page
  • Add to a notebook pageWrite
  • Rename or move a notebook pageWrite
Protocols, 8 actions
  • Start a protocol runWrite
  • Check off a stepWrite
  • Read every run's results
5 more
  • Read a protocol's steps
  • List protocol runs
  • Read a protocol run
  • Read a run's checked steps
  • Pause, complete or abandon a runWrite
Data tables, 6 actions
  • Create a data tableWrite
  • Add rowsWrite
  • Change cellsWrite
3 more
  • List data tables
  • Read table rows
  • Rename a tableWrite
Figures, 6 actions
  • Compose a figureWrite
  • Change a figureWrite
  • List charts for a figure
3 more
  • List figures
  • Read a figure
  • List figure layouts and styles
Inventory, 4 actions
  • List stock
  • Change a stock itemWrite
  • Add a stock itemWrite
1 more
  • Read a stock item
Orders, 4 actions
  • Record an orderWrite
  • Update an orderWrite
  • List orders
1 more
  • Read an order
Facility, 6 actions
  • Book an instrumentWrite
  • Read an instrument's schedule
  • Add a storage locationWrite
3 more
  • List storage and instruments
  • Read a location
  • Change a storage locationWrite
Planner, 7 actions
  • Add a cardWrite
  • Change a cardWrite
  • Search cards
4 more
  • List cards
  • Read a card
  • List board tags
  • Create a board tagWrite
Across your project, 17 actions
  • Search everything
  • Read history
  • Leave a commentWrite
14 more
  • List your projects
  • Read a project
  • See what changed lately
  • Search this guide
  • Star a recordWrite
  • Remove a starWrite
  • Read comments
  • Read a record's sign-offs
  • Summarize reviews
  • Read a record's connections
  • Link two recordsWrite
  • Remove a link between recordsWrite
  • List records from other teams
  • Copy a shared recordWrite
Contacts, 20 actions
  • Log a contactWrite
  • Load a list of contactsWrite
  • Find a contact by email or ID
17 more
  • List contacts
  • Read a contact
  • Read a contact's links
  • Read the contact log
  • List sources
  • List contact tags
  • List contact fields
  • Add a contactWrite
  • Edit a contactWrite
  • Correct a log entryWrite
  • Link contactsWrite
  • Change a link between contactsWrite
  • Remove a link between contactsWrite
  • Add or change a sourceWrite
  • Mark a value wrongWrite
  • Add or change a contact tagWrite
  • Define a contact fieldWrite

Write marks an action that needs a read and write connection. What your AI assistant can do

Questions about AI assistants in Conspecta

Which AI assistants work with Conspecta?

Claude, ChatGPT, Copilot, Cursor, Gemini CLI and any other assistant that connects to a remote MCP server. The setup guide has the steps for each one.

Setup steps for each assistant
Can Claude or ChatGPT be an AI co-scientist for my lab?

Yes. Connected to Conspecta, it works from your lab's own records. It reads your protocols, samples and results, runs image analysis and flow gating on your data, and writes up what it finds as a draft page for you to check and sign off.

What your AI assistant can do
Will I get the same numbers if I run it again?

Yes. Your assistant runs the same image analysis and gating methods you use in the app, and your lab's saved templates, with every step and setting recorded on the run. The same images give the same numbers, whoever runs them.

Image analysis templates
Can I edit what my assistant makes?

Yes. A notebook page, figure, data table or image analysis your assistant makes is saved in your project like work you made yourself. Open it in its workspace and change anything.

How your work connects
Can Claude or ChatGPT analyze my microscopy images?

Yes. Your assistant can set up an image analysis, run it over one image or a whole set, check the run against your control images, and save the counts and measurements to your project.

Image analysis in Conspecta
Can my AI assistant analyze flow cytometry data?

Yes. It can apply a saved gating template to a set of FCS files, fitting each gate to each file's own channels. It can also count the populations across your files and run clustering or dimensionality reduction on a server.

Flow cytometry in Conspecta
Can I tag an AI agent in a comment?

In early access, yes. @mention your lab's agent in a comment on any record, and it does the work and answers in the thread, with every change recorded as asked by you. Ask us to turn it on for your team.

Ask about early access
Can my assistant change my data?

Only if you allow it. When you set it up, you choose read only or read and write access, and all your projects or only the ones you pick. Read only answers questions. Read and write also lets it add and change your team's data, and every change shows in history under your name, marked via assistant.

Approve the connection
What does my assistant send to NCBI or UniProt?

It sends the words of a search, the accession number of a record you look up, or the sequence for a BLAST search, and it asks you before sending a sequence. Nothing about you, your lab or your project goes with them.

Sequences in Conspecta
How do I stop an assistant's access?

Revoke it under Connected apps in Settings, and it stops working everywhere it is signed in. A team owner or admin can also switch off access for a whole team at once.

Which plans include AI assistants?

Every paid plan. To try it on the free plan, contact us.

See pricing

Connect your assistant and ask about your lab.

Add Conspecta to Claude, ChatGPT or Copilot, and approve what it can reach.

Start for freeRead the setup steps